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Controlled Vocabularies
The following controlled vocabularies are used on this site. Click a vocabulary short name for more details.
| Short Name | Vocabulary Name(s) | Description | Loaded Terms |
|---|---|---|---|
| AFP | afo | Allotrope Merged Ontology Suite | 1 |
| CO_010 | germplasm_ontology | Crop Germplasm Ontology | 4 |
| data | EDAM, EADM | Bioinformatics operations, data types, formats, identifiers and topics. | 23 |
| dc | dc | DCMI Metadata Terms. | 1 |
| ECO | ECO | 1 | |
| EFO | efo | Experimental Factor Ontology | 4 |
| ERO | ero | The Eagle-I Research Resource Ontology | 2 |
| format | EDAM | A defined way or layout of representing and structuring data in a computer file, blob, string, message, or elsewhere. The main focus in EDAM lies on formats as means of structuring data exchanged between different tools or resources. | 1 |
| GO | GO | 6 | |
| hydra | hydra | A Vocabulary for Hypermedia-Driven Web APIs | 6 |
| IAO | IAO | The Information Artifact Ontology (IAO). | 3 |
| local | local, organism_property, analysis_property, tripal_phylogeny, featuremap_units, featurepos_property, featuremap_property, library_property, library_type, project_property, study_property, tripal_analysis, nd_experiment_types, nd_geolocation_property, biomaterial_property | Terms created for this site. | 97 |
| NCBI_BioSample_Attributes | NCBI BioSample Attributes | This database provides, in XML format, the listing of attribute names for biosamples housed in NCBI. | 938 |
| NCBITaxon | ncbitaxon | NCBI organismal classification. | 1 |
| NCIT | ncit | NCI Thesaurus OBO Edition. | 22 |
| null | null, chado_properties | No online database. | 2 |
| OBCS | OBCS | Ontology of Biological and Clinical Statistics. | 1 |
| OBI | obi, OBI | The Ontology for Biomedical Investigation. | 3 |
| OGI | ogi | Ontology for genetic interval. | 1 |
| operation | EDAM | A function that processes a set of inputs and results in a set of outputs, or associates arguments (inputs) with values (outputs). Special cases are: a) An operation that consumes no input (has no input arguments). | 5 |
| rdfs | rdfs | Resource Description Framework Schema | 3 |
| SBO | sbo | Systems Biology. | 3 |
| schema | schema | Schema.org. | 9 |
| sep | sep | Sample processing and separation techniques. | 3 |
| SIO | SIO | Semanticscience Integrated Ontology. | 10 |
| SO | sequence | The sequence ontology. | 2,363 |
| SWO | swo | Bioinformatics operations, data types, formats, identifiers and topics | 1 |
| synonym_type | synonym_type | 4 | |
| TAXRANK | taxonomic_rank | A vocabulary of taxonomic ranks (species, family, phylum, etc) | 61 |
| TCONTACT | tripal_contact | Tripal Contact Ontology. A temporary ontology until a more formal appropriate ontology an be identified. | 28 |
| TPUB | tripal_pub | Tripal Publication Ontology. A temporary ontology until a more formal appropriate ontology an be identified. | 212 |
| tripal | biomaterial_property, tripal | 746 | |
| UO | uo | Units of Measurement Ontology | 1 |